Flowworkspacedata
WebDOI: 10.18129/B9.bioc.flowWorkspaceData A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages. WebDec 7, 2024 · Download stats for experiment package flowWorkspaceData. This page was generated on 2024-12-02 01:16:50 -0500 (Fri, 02 Dec 2024). flowWorkspaceData …
Flowworkspacedata
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Weblibrary (flowWorkspace) dataDir <-system.file ("extdata", package = "flowWorkspaceData") wsfile <-list.files (dataDir, pattern = "manual.xml",full = TRUE) ws <-openWorkspace (wsfile); gs < … WebNov 8, 2024 · This is a lightweight copying which is faster than gs_clone.But be aware the new GatingSet share the same events data (i.e. gs_cyto_data(gs)) with the original one.. …
WebMay 6, 2024 · RGLab/flowWorkspaceData: A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages. The necessary external data to run the flowWorkspace and openCyto vignette is found in this package. Getting started ... WebRGLab/flowWorkspaceData. This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. master. Switch branches/tags. …
Webrecipe bioconductor-flowworkspacedata A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages. WebDOI: 10.18129/B9.bioc.flowWorkspaceData This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see flowWorkspaceData. A …
WebThe issue here is that gate2 actually has 4 filter objects (polygon gates specifically).gs_pop_add is expecting you to add a single filter (the same gate will be applied to all samples) or, in the case of a list of filter objects, a filter for each sample in the GatingSet.In that case, in order to disambiguate which gate goes with which sample, it …
Web1. Introduction. The openCyto package is designed to facilitate the application of automated gating methods in a sequential way to mimic the construction of a manual gating … the peak edisonWebCytoML: Cross-Platform Cytometry Data Sharing. This package is designed to import/export the hierarchical gated cytometry data to and from R (specifically the openCyto framework) using the gatingML2.0 and FCS3.0 cytometry data standards. This package makes use of the GatingSet R object and data model so that imported data can easily be … shy wolf photographyWebExtracting a subset of a cytoframe is not computationally intensive, as it merely constructs a view of the data of the original cytoframe. However, both objects still share the same underlying pointer to all of the data and … the peake financial groupWebThis package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of … the peak fm new york\u0027s backyardWebTo install this package run one of the following: conda install -c bioconda bioconductor-flowworkspacedataconda install -c "bioconda/label/gcc7" bioconductor-flowworkspacedata. Description. The necessary external data to run the flowWorkspace and openCyto vignette is found in this package. the peak fly shop colorado springsWebWith the dedicated fority method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to … the peaker trustWebbioconda / packages / bioconductor-flowworkspacedata 3.9.0 0 A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three … the peak fitness club and spa